Pontibacter silvestris sp. nov., isolated from the soil of a Populus euphratica forest and emended description of the genus Pontibacter.
Identifieur interne : 000D31 ( Main/Exploration ); précédent : 000D30; suivant : 000D32Pontibacter silvestris sp. nov., isolated from the soil of a Populus euphratica forest and emended description of the genus Pontibacter.
Auteurs : Ghenijan Osman [République populaire de Chine] ; Zhifang Wang [République populaire de Chine] ; Ning Wang [République populaire de Chine] ; Gulinisha Shayimu [République populaire de Chine] ; Min Hou [République populaire de Chine] ; Wenchao Guo [République populaire de Chine] ; Xinping Yang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2018.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Bacteroidetes (classification), Bacteroidetes (génétique), Bacteroidetes (isolement et purification), Chine (MeSH), Composition en bases nucléiques (MeSH), Forêts (MeSH), Microbiologie du sol (MeSH), Phosphatidyléthanolamine (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Vitamine K2 (analogues et dérivés), Vitamine K2 (composition chimique).
- MESH :
- analogues et dérivés : Vitamine K2.
- composition chimique : Acides gras, Bacteroidetes, Phosphatidyléthanolamine, Vitamine K2.
- génétique : ADN bactérien, ARN ribosomique 16S, Bacteroidetes.
- isolement et purification : Bacteroidetes.
- microbiologie : Populus.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Forêts, Microbiologie du sol, Phylogenèse, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Bacteroidetes (classification), Bacteroidetes (genetics), Bacteroidetes (isolation & purification), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Forests (MeSH), Phosphatidylethanolamines (chemistry), Phylogeny (MeSH), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Vitamin K 2 (analogs & derivatives), Vitamin K 2 (chemistry).
- MESH :
- chemical , analogs & derivatives : Vitamin K 2.
- chemical , chemistry : Fatty Acids, Phosphatidylethanolamines, Vitamin K 2.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Bacteroidetes.
- genetics : Bacteroidetes.
- isolation & purification : Bacteroidetes.
- microbiology : Populus.
- Bacterial Typing Techniques, Base Composition, China, Forests, Phylogeny, Sequence Analysis, DNA, Soil Microbiology.
Abstract
Strain XAAS-R86T, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86T represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086T is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86T represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86T (=CCTCC AB 2017165T=KCTC 62047T).
DOI: 10.1099/ijsem.0.002972
PubMed: 30141769
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Bacteroidetes (isolation & purification)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Forests (MeSH)</term>
<term>Phosphatidylethanolamines (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
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<term>Vitamin K 2 (analogs & derivatives)</term>
<term>Vitamin K 2 (chemistry)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
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<term>Bacteroidetes (génétique)</term>
<term>Bacteroidetes (isolement et purification)</term>
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<term>Forêts (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Phosphatidyléthanolamine (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
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<term>Vitamine K2 (composition chimique)</term>
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<term>Vitamin K 2</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
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<keywords scheme="MESH" qualifier="analogues et dérivés" xml:lang="fr"><term>Vitamine K2</term>
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<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteroidetes</term>
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<term>Bacteroidetes</term>
<term>Phosphatidyléthanolamine</term>
<term>Vitamine K2</term>
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<term>ARN ribosomique 16S</term>
<term>Bacteroidetes</term>
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<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteroidetes</term>
</keywords>
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<term>Composition en bases nucléiques</term>
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<front><div type="abstract" xml:lang="en">Strain XAAS-R86<sup>T</sup>
, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86<sup>T</sup>
represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086<sup>T</sup>
is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86<sup>T</sup>
represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86<sup>T</sup>
(=CCTCC AB 2017165<sup>T</sup>
=KCTC 62047<sup>T</sup>
).</div>
</front>
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<JournalIssue CitedMedium="Internet"><Volume>68</Volume>
<Issue>10</Issue>
<PubDate><Year>2018</Year>
<Month>Oct</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Pontibacter silvestris sp. nov., isolated from the soil of a Populus euphratica forest and emended description of the genus Pontibacter.</ArticleTitle>
<Pagination><MedlinePgn>3243-3247</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002972</ELocationID>
<Abstract><AbstractText>Strain XAAS-R86<sup>T</sup>
, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86<sup>T</sup>
represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086<sup>T</sup>
is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86<sup>T</sup>
represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86<sup>T</sup>
(=CCTCC AB 2017165<sup>T</sup>
=KCTC 62047<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Osman</LastName>
<ForeName>Ghenijan</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Zhifang</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Ning</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shayimu</LastName>
<ForeName>Gulinisha</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hou</LastName>
<ForeName>Min</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Wenchao</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Xinping</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>2Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>1Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>08</Month>
<Day>24</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010714">Phosphatidylethanolamines</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>39382-08-6</RegistryNumber>
<NameOfSubstance UI="C483858">phosphatidylethanolamine</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>8427BML8NY</RegistryNumber>
<NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D041963" MajorTopicYN="N">Bacteroidetes</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D065928" MajorTopicYN="Y">Forests</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010714" MajorTopicYN="N">Phosphatidylethanolamines</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Pontibacter</Keyword>
<Keyword MajorTopicYN="N">Populus euphratica</Keyword>
<Keyword MajorTopicYN="N">forest soil</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2018</Year>
<Month>8</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2018</Year>
<Month>10</Month>
<Day>13</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2018</Year>
<Month>8</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">30141769</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002972</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Osman, Ghenijan" sort="Osman, Ghenijan" uniqKey="Osman G" first="Ghenijan" last="Osman">Ghenijan Osman</name>
</noRegion>
<name sortKey="Guo, Wenchao" sort="Guo, Wenchao" uniqKey="Guo W" first="Wenchao" last="Guo">Wenchao Guo</name>
<name sortKey="Guo, Wenchao" sort="Guo, Wenchao" uniqKey="Guo W" first="Wenchao" last="Guo">Wenchao Guo</name>
<name sortKey="Hou, Min" sort="Hou, Min" uniqKey="Hou M" first="Min" last="Hou">Min Hou</name>
<name sortKey="Hou, Min" sort="Hou, Min" uniqKey="Hou M" first="Min" last="Hou">Min Hou</name>
<name sortKey="Osman, Ghenijan" sort="Osman, Ghenijan" uniqKey="Osman G" first="Ghenijan" last="Osman">Ghenijan Osman</name>
<name sortKey="Shayimu, Gulinisha" sort="Shayimu, Gulinisha" uniqKey="Shayimu G" first="Gulinisha" last="Shayimu">Gulinisha Shayimu</name>
<name sortKey="Shayimu, Gulinisha" sort="Shayimu, Gulinisha" uniqKey="Shayimu G" first="Gulinisha" last="Shayimu">Gulinisha Shayimu</name>
<name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
<name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
<name sortKey="Wang, Zhifang" sort="Wang, Zhifang" uniqKey="Wang Z" first="Zhifang" last="Wang">Zhifang Wang</name>
<name sortKey="Wang, Zhifang" sort="Wang, Zhifang" uniqKey="Wang Z" first="Zhifang" last="Wang">Zhifang Wang</name>
<name sortKey="Yang, Xinping" sort="Yang, Xinping" uniqKey="Yang X" first="Xinping" last="Yang">Xinping Yang</name>
<name sortKey="Yang, Xinping" sort="Yang, Xinping" uniqKey="Yang X" first="Xinping" last="Yang">Xinping Yang</name>
</country>
</tree>
</affiliations>
</record>
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