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Pontibacter silvestris sp. nov., isolated from the soil of a Populus euphratica forest and emended description of the genus Pontibacter.

Identifieur interne : 000D31 ( Main/Exploration ); précédent : 000D30; suivant : 000D32

Pontibacter silvestris sp. nov., isolated from the soil of a Populus euphratica forest and emended description of the genus Pontibacter.

Auteurs : Ghenijan Osman [République populaire de Chine] ; Zhifang Wang [République populaire de Chine] ; Ning Wang [République populaire de Chine] ; Gulinisha Shayimu [République populaire de Chine] ; Min Hou [République populaire de Chine] ; Wenchao Guo [République populaire de Chine] ; Xinping Yang [République populaire de Chine]

Source :

RBID : pubmed:30141769

Descripteurs français

English descriptors

Abstract

Strain XAAS-R86T, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86T represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086T is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86T represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86T (=CCTCC AB 2017165T=KCTC 62047T).

DOI: 10.1099/ijsem.0.002972
PubMed: 30141769


Affiliations:


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Le document en format XML

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<term>Bacteroidetes (isolation & purification)</term>
<term>Base Composition (MeSH)</term>
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<term>DNA, Bacterial (genetics)</term>
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<term>Bacteroidetes (génétique)</term>
<term>Bacteroidetes (isolement et purification)</term>
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<term>Forêts (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Phosphatidyléthanolamine (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
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<term>RNA, Ribosomal, 16S</term>
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<term>Acides gras</term>
<term>Bacteroidetes</term>
<term>Phosphatidyléthanolamine</term>
<term>Vitamine K2</term>
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<term>Bacteroidetes</term>
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<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Bacteroidetes</term>
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<term>Bacteroidetes</term>
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<term>Bacteroidetes</term>
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<front>
<div type="abstract" xml:lang="en">Strain XAAS-R86
<sup>T</sup>
, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86
<sup>T</sup>
represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086
<sup>T</sup>
is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86
<sup>T</sup>
represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86
<sup>T</sup>
(=CCTCC AB 2017165
<sup>T</sup>
=KCTC 62047
<sup>T</sup>
).</div>
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<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
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<AbstractText>Strain XAAS-R86
<sup>T</sup>
, a Gram-stain-negative, short rod-shaped, non-motile, aerobic bacterium, was isolated from a Populus euphratica forest near the city of Hotan, Xinjiang, PR China. The cells were found to be positive for catalase and oxidase activities. Growth occurred optimally at 28-30 °C, pH 7.0-7.5 and in the presence of 0.5-2.0 % NaCl (w/v). The results of phylogenetic analysis of the 16S rRNA gene indicated that XAAS-R86
<sup>T</sup>
represents a member of the genus Pontibacter within the family Hymenobacteraceae. Pontibacter akesuensis CCTCC AB 206086
<sup>T</sup>
is the most closely related species with a validly published name, based on 16S rRNA gene sequence identity (95.7 %). The DNA G+C content of the strain is 43.9 mol%. The main respiratory quinone is MK-7 and the major cellular fatty acids are summed feature 4 (iso-C17 : 1I and/or anteiso-C17 : 1B) and iso-C15 : 0 and its major polar lipids are phosphatidylethanolamine and two unidentified lipids. On the basis of the results of tests performed using a polyphasic approach, XAAS-R86
<sup>T</sup>
represents a novel species of the genus Pontibacter, for which the name Pontibactersilvestris sp. nov. is proposed, with the type strain XAAS-R86
<sup>T</sup>
(=CCTCC AB 2017165
<sup>T</sup>
=KCTC 62047
<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Osman</LastName>
<ForeName>Ghenijan</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Zhifang</ForeName>
<Initials>Z</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Ning</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shayimu</LastName>
<ForeName>Gulinisha</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hou</LastName>
<ForeName>Min</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Guo</LastName>
<ForeName>Wenchao</ForeName>
<Initials>W</Initials>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yang</LastName>
<ForeName>Xinping</ForeName>
<Initials>X</Initials>
<AffiliationInfo>
<Affiliation>2​Xingjian Laboratory of Special Environmental Microbiology, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>1​Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2018</Year>
<Month>08</Month>
<Day>24</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010714">Phosphatidylethanolamines</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>39382-08-6</RegistryNumber>
<NameOfSubstance UI="C483858">phosphatidylethanolamine</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>8427BML8NY</RegistryNumber>
<NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D041963" MajorTopicYN="N">Bacteroidetes</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D065928" MajorTopicYN="Y">Forests</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010714" MajorTopicYN="N">Phosphatidylethanolamines</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Pontibacter</Keyword>
<Keyword MajorTopicYN="N">Populus euphratica</Keyword>
<Keyword MajorTopicYN="N">forest soil</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="pubmed">
<Year>2018</Year>
<Month>8</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2018</Year>
<Month>10</Month>
<Day>13</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2018</Year>
<Month>8</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">30141769</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002972</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Osman, Ghenijan" sort="Osman, Ghenijan" uniqKey="Osman G" first="Ghenijan" last="Osman">Ghenijan Osman</name>
</noRegion>
<name sortKey="Guo, Wenchao" sort="Guo, Wenchao" uniqKey="Guo W" first="Wenchao" last="Guo">Wenchao Guo</name>
<name sortKey="Guo, Wenchao" sort="Guo, Wenchao" uniqKey="Guo W" first="Wenchao" last="Guo">Wenchao Guo</name>
<name sortKey="Hou, Min" sort="Hou, Min" uniqKey="Hou M" first="Min" last="Hou">Min Hou</name>
<name sortKey="Hou, Min" sort="Hou, Min" uniqKey="Hou M" first="Min" last="Hou">Min Hou</name>
<name sortKey="Osman, Ghenijan" sort="Osman, Ghenijan" uniqKey="Osman G" first="Ghenijan" last="Osman">Ghenijan Osman</name>
<name sortKey="Shayimu, Gulinisha" sort="Shayimu, Gulinisha" uniqKey="Shayimu G" first="Gulinisha" last="Shayimu">Gulinisha Shayimu</name>
<name sortKey="Shayimu, Gulinisha" sort="Shayimu, Gulinisha" uniqKey="Shayimu G" first="Gulinisha" last="Shayimu">Gulinisha Shayimu</name>
<name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
<name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
<name sortKey="Wang, Zhifang" sort="Wang, Zhifang" uniqKey="Wang Z" first="Zhifang" last="Wang">Zhifang Wang</name>
<name sortKey="Wang, Zhifang" sort="Wang, Zhifang" uniqKey="Wang Z" first="Zhifang" last="Wang">Zhifang Wang</name>
<name sortKey="Yang, Xinping" sort="Yang, Xinping" uniqKey="Yang X" first="Xinping" last="Yang">Xinping Yang</name>
<name sortKey="Yang, Xinping" sort="Yang, Xinping" uniqKey="Yang X" first="Xinping" last="Yang">Xinping Yang</name>
</country>
</tree>
</affiliations>
</record>

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